Detailed information of SNP:
|
SNP ID:
sf1102423757(Gbrowse)
Chromosome: chr11 Position: 2423757 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 71.83% | 28.17% |
| All Indica | 796 | 54.40% | 45.60% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 14.71% | 85.29% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102423757 | G->A | INTERGENIC | None |