Detailed information of SNP:
|
SNP ID:
sf1102426462(Gbrowse)
Chromosome: chr11 Position: 2426462 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.62% | 31.38% |
| All Indica | 798 | 52.76% | 47.24% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102426462 | A->G | INTERGENIC | None |