Detailed information of SNP:
|
SNP ID:
sf1102428194(Gbrowse)
Chromosome: chr11 Position: 2428194 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 86.59% | 13.41% |
| All Indica | 797 | 80.30% | 19.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102428194 | G->C | INTERGENIC | None |