Detailed information of SNP:
|
SNP ID:
sf1102430510(Gbrowse)
Chromosome: chr11 Position: 2430510 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 97.88% | 2.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102430510 | A->G | LOC_Os11g05410(LOC_Os11g05410.1) | INTRON |
| sf1102430510 | A->G | LOC_Os11g05410(LOC_Os11g05410.2) | INTRON |