Detailed information of SNP:
|
SNP ID:
sf1102438220(Gbrowse)
Chromosome: chr11 Position: 2438220 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.94% | 42.06% |
| All Indica | 798 | 27.82% | 72.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 4.27% | 95.73% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102438220 | T->C | INTERGENIC | None |