Detailed information of SNP:
|
SNP ID:
sf1102442055(Gbrowse)
Chromosome: chr11 Position: 2442055 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1328 | 97.29% | 2.71% |
| All Indica | 726 | 96.56% | 3.44% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 53 | 83.02% | 16.98% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 155 | 89.68% | 10.32% |
| Indica Intermediate | 198 | 96.46% | 3.54% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102442055 | A->T | INTERGENIC | None |