Detailed information of SNP:
|
SNP ID:
sf1102442410(Gbrowse)
Chromosome: chr11 Position: 2442410 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 89.17% | 10.83% |
| All Indica | 794 | 83.25% | 16.75% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 48.10% | 51.90% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102442410 | A->G | INTERGENIC | None |