Detailed information of SNP:
|
SNP ID:
sf1102445863(Gbrowse)
Chromosome: chr11 Position: 2445863 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 88.31% | 11.69% |
| All Indica | 792 | 83.21% | 16.79% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 206 | 86.41% | 13.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102445863 | C->T | LOC_Os11g05460(LOC_Os11g05460.1) | Non-Synonymous SNP |