Detailed information of SNP:
|
SNP ID:
sf1102468518(Gbrowse)
Chromosome: chr11 Position: 2468518 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 56.29% | 43.71% |
| All Indica | 797 | 26.98% | 73.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 5.35% | 94.65% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102468518 | A->G | INTERGENIC | None |