Detailed information of SNP:
|
SNP ID:
sf1102468993(Gbrowse)
Chromosome: chr11 Position: 2468993 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 83.96% | 16.04% |
| All Indica | 795 | 81.51% | 18.49% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 46.92% | 53.08% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102468993 | G->A | INTERGENIC | None |