Detailed information of SNP:
|
SNP ID:
sf1102572746(Gbrowse)
Chromosome: chr11 Position: 2572746 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.51% | 36.49% |
| All Indica | 797 | 40.78% | 59.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 67.56% | 32.44% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 211 | 30.33% | 69.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102572746 | C->T | INTERGENIC | None |