Detailed information of SNP:
|
SNP ID:
sf1102577062(Gbrowse)
Chromosome: chr11 Position: 2577062 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 71.04% | 28.96% |
| All Indica | 799 | 54.69% | 45.31% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102577062 | T->C | INTERGENIC | None |