Detailed information of SNP:
|
SNP ID:
sf1102635143(Gbrowse)
Chromosome: chr11 Position: 2635143 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 74.05% | 25.95% |
| All Indica | 795 | 59.12% | 40.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 374 | 76.74% | 23.26% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 208 | 61.54% | 38.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102635143 | C->T | INTERGENIC | None |