Detailed information of SNP:
|
SNP ID:
sf1102657227(Gbrowse)
Chromosome: chr11 Position: 2657227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1290 | 74.65% | 25.35% |
| All Indica | 679 | 55.67% | 44.33% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 67.69% | 32.31% |
| Indica I | 325 | 81.54% | 18.46% |
| Indica II | 172 | 19.77% | 80.23% |
| Indica Intermediate | 182 | 43.41% | 56.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102657227 | G->A | INTERGENIC | None |