Detailed information of SNP:
|
SNP ID:
sf1102721937(Gbrowse)
Chromosome: chr11 Position: 2721937 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 82.52% | 17.48% |
| All Indica | 793 | 71.37% | 28.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 209 | 64.11% | 35.89% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102721937 | C->T | INTERGENIC | None |