Detailed information of SNP:
|
SNP ID:
sf1102752748(Gbrowse)
Chromosome: chr11 Position: 2752748 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 92.93% | 7.07% |
| All Indica | 789 | 97.08% | 2.92% |
| All Japonica | 475 | 84.42% | 15.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 316 | 77.22% | 22.78% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102752748 | T->C | INTERGENIC | None |