Detailed information of SNP:
|
SNP ID:
sf1102777453(Gbrowse)
Chromosome: chr11 Position: 2777453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 95.91% | 4.09% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102777453 | G->A | LOC_Os11g05920(LOC_Os11g05920.1) | INTRON |