Detailed information of SNP:
|
SNP ID:
sf1102797328(Gbrowse)
Chromosome: chr11 Position: 2797328 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.27% | 19.73% |
| All Indica | 799 | 67.58% | 32.42% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102797328 | G->C | LOC_Os11g05940(LOC_Os11g05940.1) | INTRON |