Detailed information of SNP:
|
SNP ID:
sf1102849952(Gbrowse)
Chromosome: chr11 Position: 2849952 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1161 | 96.47% | 3.53% |
| All Indica | 647 | 93.66% | 6.34% |
| All Japonica | 410 | 100.00% | 0.00% |
| Aus | 56 | 100.00% | 0.00% |
| Indica I | 294 | 92.52% | 7.48% |
| Indica II | 169 | 94.08% | 5.92% |
| Indica Intermediate | 184 | 95.11% | 4.89% |
| Temperate Japonica | 285 | 100.00% | 0.00% |
| Tropical Japonica | 68 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102849952 | G->A | INTERGENIC | None |