Detailed information of SNP:
|
SNP ID:
sf1102874947(Gbrowse)
Chromosome: chr11 Position: 2874947 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.55% | 33.45% |
| All Indica | 797 | 48.06% | 51.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 211 | 72.04% | 27.96% |
| Indica Intermediate | 211 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1102874947 | T->C | INTERGENIC | None |