Detailed information of SNP:



SNP ID: sf1102938878(Gbrowse)

Chromosome: chr11

Position: 2938878
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1369 97.88% 2.12%
All Indica793 99.75% 0.25%
All Japonica457 94.09% 5.91%
Aus66 100.00% 0.00%
Indica I373 99.46% 0.54%
Indica II210 100.00% 0.00%
Indica Intermediate210 100.00% 0.00%
Temperate Japonica308 97.40% 2.60%
Tropical Japonica86 97.67% 2.33%
Japonica Intermediate63 73.02% 26.98%
Group VI/Aromatic14 100.00% 0.00%
Intermediate39 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1102938878 A->C INTERGENIC None