Detailed information of SNP:
SNP ID:
sf1102938878(Gbrowse)
Chromosome: chr11 Position: 2938878 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1369 | 97.88% | 2.12% |
All Indica | 793 | 99.75% | 0.25% |
All Japonica | 457 | 94.09% | 5.91% |
Aus | 66 | 100.00% | 0.00% |
Indica I | 373 | 99.46% | 0.54% |
Indica II | 210 | 100.00% | 0.00% |
Indica Intermediate | 210 | 100.00% | 0.00% |
Temperate Japonica | 308 | 97.40% | 2.60% |
Tropical Japonica | 86 | 97.67% | 2.33% |
Japonica Intermediate | 63 | 73.02% | 26.98% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1102938878 | A->C | INTERGENIC | None |