Detailed information of SNP:
|
SNP ID:
sf1103046288(Gbrowse)
Chromosome: chr11 Position: 3046288 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 73.27% | 26.73% |
| All Indica | 798 | 56.27% | 43.73% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 210 | 39.52% | 60.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103046288 | A->C | INTERGENIC | None |