Detailed information of SNP:
|
SNP ID:
sf1103047854(Gbrowse)
Chromosome: chr11 Position: 3047854 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 73.76% | 26.24% |
| All Indica | 795 | 56.98% | 43.02% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 212 | 11.79% | 88.21% |
| Indica Intermediate | 209 | 41.15% | 58.85% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103047854 | G->A | INTERGENIC | None |