Detailed information of SNP:
|
SNP ID:
sf1103049118(Gbrowse)
Chromosome: chr11 Position: 3049118 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 79.24% | 20.76% |
| All Indica | 797 | 68.13% | 31.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 38.77% | 61.23% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103049118 | C->T | INTERGENIC | None |