Detailed information of SNP:
|
SNP ID:
sf1103049135(Gbrowse)
Chromosome: chr11 Position: 3049135 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 79.27% | 20.73% |
| All Indica | 798 | 68.17% | 31.83% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 39.04% | 60.96% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103049135 | T->A | INTERGENIC | None |