Detailed information of SNP:
|
SNP ID:
sf1103049706(Gbrowse)
Chromosome: chr11 Position: 3049706 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 96.80% | 3.20% |
| All Indica | 794 | 96.98% | 3.02% |
| All Japonica | 488 | 95.70% | 4.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103049706 | C->T | INTERGENIC | None |