Detailed information of SNP:
|
SNP ID:
sf1103051474(Gbrowse)
Chromosome: chr11 Position: 3051474 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 91.40% | 8.60% |
| All Indica | 736 | 88.45% | 11.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 323 | 76.16% | 23.84% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 200 | 96.50% | 3.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103051474 | C->T | INTERGENIC | None |