Detailed information of SNP:
|
SNP ID:
sf1103064458(Gbrowse)
Chromosome: chr11 Position: 3064458 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 72.82% | 27.18% |
| All Indica | 793 | 54.10% | 45.90% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 211 | 13.74% | 86.26% |
| Indica Intermediate | 209 | 33.49% | 66.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103064458 | C->T | LOC_Os11g06380(LOC_Os11g06380.1) | Non-Synonymous SNP |