Detailed information of SNP:
|
SNP ID:
sf1103066850(Gbrowse)
Chromosome: chr11 Position: 3066850 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 71.54% | 28.46% |
| All Indica | 797 | 52.32% | 47.68% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 13.15% | 86.85% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103066850 | C->T | LOC_Os11g06380(LOC_Os11g06380.1) | INTRON |