Detailed information of SNP:
|
SNP ID:
sf1103068904(Gbrowse)
Chromosome: chr11 Position: 3068904 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 83.80% | 16.20% |
| All Indica | 783 | 75.22% | 24.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 360 | 51.94% | 48.06% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103068904 | C->T | INTERGENIC | None |