Detailed information of SNP:
|
SNP ID:
sf1103072460(Gbrowse)
Chromosome: chr11 Position: 3072460 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 71.42% | 28.58% |
| All Indica | 797 | 52.07% | 47.93% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 12.26% | 87.74% |
| Indica Intermediate | 211 | 28.91% | 71.09% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103072460 | A->G | INTERGENIC | None |