Detailed information of SNP:
|
SNP ID:
sf1103092703(Gbrowse)
Chromosome: chr11 Position: 3092703 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.23% | 28.77% |
| All Indica | 798 | 51.75% | 48.25% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103092703 | T->C | INTERGENIC | None |