Detailed information of SNP:
|
SNP ID:
sf1103092825(Gbrowse)
Chromosome: chr11 Position: 3092825 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 73.21% | 26.79% |
| All Indica | 789 | 55.51% | 44.49% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 370 | 88.92% | 11.08% |
| Indica II | 211 | 17.54% | 82.46% |
| Indica Intermediate | 208 | 34.62% | 65.38% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103092825 | C->T | INTERGENIC | None |