Detailed information of SNP:
|
SNP ID:
sf1103100570(Gbrowse)
Chromosome: chr11 Position: 3100570 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 77.48% | 22.52% |
| All Indica | 794 | 61.84% | 38.16% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 211 | 29.38% | 70.62% |
| Indica Intermediate | 209 | 42.11% | 57.89% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103100570 | G->A | INTERGENIC | None |