Detailed information of SNP:
|
SNP ID:
sf1103101512(Gbrowse)
Chromosome: chr11 Position: 3101512 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1205 | 95.77% | 4.23% |
| All Indica | 765 | 95.95% | 4.05% |
| All Japonica | 334 | 98.20% | 1.80% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 351 | 93.16% | 6.84% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 210 | 100.00% | 0.00% |
| Tropical Japonica | 76 | 96.05% | 3.95% |
| Japonica Intermediate | 48 | 93.75% | 6.25% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 34 | 91.18% | 8.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103101512 | C->T | LOC_Os11g06430(LOC_Os11g06430.1) | Non-Synonymous SNP |