Detailed information of SNP:
|
SNP ID:
sf1103128970(Gbrowse)
Chromosome: chr11 Position: 3128970 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 97.10% | 2.90% |
| All Indica | 793 | 95.71% | 4.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103128970 | T->C | LOC_Os11g06480(LOC_Os11g06480.1) | INTRON |