Detailed information of SNP:
|
SNP ID:
sf1103151727(Gbrowse)
Chromosome: chr11 Position: 3151727 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.07% | 24.93% |
| All Indica | 796 | 59.92% | 40.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 209 | 44.98% | 55.02% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103151727 | C->T | INTERGENIC | None |