Detailed information of SNP:
|
SNP ID:
sf1103152791(Gbrowse)
Chromosome: chr11 Position: 3152791 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 75.80% | 24.20% |
| All Indica | 794 | 60.20% | 39.80% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 208 | 16.83% | 83.17% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103152791 | C->T | INTERGENIC | None |