Detailed information of SNP:
|
SNP ID:
sf1103154393(Gbrowse)
Chromosome: chr11 Position: 3154393 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 75.05% | 24.95% |
| All Indica | 795 | 58.87% | 41.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 208 | 42.79% | 57.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103154393 | A->G | INTERGENIC | None |