Detailed information of SNP:
|
SNP ID:
sf1103154405(Gbrowse)
Chromosome: chr11 Position: 3154405 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.30% | 24.70% |
| All Indica | 797 | 59.22% | 40.78% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 210 | 44.29% | 55.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103154405 | G->A | INTERGENIC | None |