Detailed information of SNP:
|
SNP ID:
sf1103154622(Gbrowse)
Chromosome: chr11 Position: 3154622 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 74.68% | 25.32% |
| All Indica | 788 | 57.99% | 42.01% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 209 | 13.88% | 86.12% |
| Indica Intermediate | 207 | 41.55% | 58.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103154622 | C->T | INTERGENIC | None |