Detailed information of SNP:
|
SNP ID:
sf1103156439(Gbrowse)
Chromosome: chr11 Position: 3156439 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 74.10% | 25.90% |
| All Indica | 797 | 57.47% | 42.53% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 212 | 13.68% | 86.32% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103156439 | G->A | LOC_Os11g06570(LOC_Os11g06570.1) | INTRON |