Detailed information of SNP:
|
SNP ID:
sf1103180134(Gbrowse)
Chromosome: chr11 Position: 3180134 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 85.28% | 14.72% |
| All Indica | 775 | 74.45% | 25.55% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 94.86% | 5.14% |
| Indica II | 201 | 50.75% | 49.25% |
| Indica Intermediate | 204 | 60.78% | 39.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103180134 | G->A | INTERGENIC | None |