Detailed information of SNP:
|
SNP ID:
sf1103183045(Gbrowse)
Chromosome: chr11 Position: 3183045 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1373 | 97.45% | 2.55% |
| All Indica | 755 | 96.16% | 3.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 357 | 97.76% | 2.24% |
| Indica II | 203 | 94.58% | 5.42% |
| Indica Intermediate | 195 | 94.87% | 5.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103183045 | T->C | INTERGENIC | None |