Detailed information of SNP:
|
SNP ID:
sf1103235056(Gbrowse)
Chromosome: chr11 Position: 3235056 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 497 | 6.84% | 93.16% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103235056 | A->G | INTERGENIC | None |