Detailed information of SNP:
|
SNP ID:
sf1103302507(Gbrowse)
Chromosome: chr11 Position: 3302507 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 92.28% | 7.72% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 402 | 74.88% | 25.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 264 | 65.91% | 34.09% |
| Tropical Japonica | 79 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 81.36% | 18.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103302507 | G->A | INTERGENIC | None |