Detailed information of SNP:
|
SNP ID:
sf1103326693(Gbrowse)
Chromosome: chr11 Position: 3326693 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1203 | 54.78% | 45.22% |
| All Indica | 620 | 92.74% | 7.26% |
| All Japonica | 493 | 5.68% | 94.32% |
| Aus | 37 | 86.49% | 13.51% |
| Indica I | 268 | 91.04% | 8.96% |
| Indica II | 183 | 95.08% | 4.92% |
| Indica Intermediate | 169 | 92.90% | 7.10% |
| Temperate Japonica | 332 | 1.51% | 98.49% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103326693 | T->C | LOC_Os11g06800(LOC_Os11g06800.1) | INTRON |