Detailed information of SNP:
|
SNP ID:
sf1103420223(Gbrowse)
Chromosome: chr11 Position: 3420223 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.44% | 36.56% |
| All Indica | 789 | 38.53% | 61.47% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 369 | 29.81% | 70.19% |
| Indica II | 210 | 58.57% | 41.43% |
| Indica Intermediate | 210 | 33.81% | 66.19% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103420223 | T->C | INTERGENIC | None |