Detailed information of SNP:
|
SNP ID:
sf1103511402(Gbrowse)
Chromosome: chr11 Position: 3511402 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 87.12% | 12.88% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 476 | 63.45% | 36.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 319 | 70.53% | 29.47% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 63 | 74.60% | 25.40% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103511402 | A->G | INTERGENIC | None |