Detailed information of SNP:
|
SNP ID:
sf1103529712(Gbrowse)
Chromosome: chr11 Position: 3529712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 86.02% | 13.98% |
| All Indica | 797 | 78.17% | 21.83% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 211 | 46.92% | 53.08% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1103529712 | C->T | LOC_Os11g07090(LOC_Os11g07090.1) | Synonymous |